Les journées se dérouleront entre le jeudi 26 novembre matin (9h30) et le vendredi 27 novembre après-midi (16h50).
Le programme comprend des exposés sélectionnés sur soumission et des exposés invités.
Actes : SeqBio2015-Proceedings.pdf.
Nous aurons le plaisir d’écouter les exposés invités de :
- Can Alkan, Bilkent University, Turquie :
Discovery of large genomic inversions using pooled clone
sequencing. - Morgane Thomas-Chollier, École normale supérieure de Paris :
Analyses of cis-regulatory elements from ChIP-seq and ChIP-exo experiments. - Mark Daniel Ward, Purdue University, États-Unis :
On the Variety of Uncorrelated Shapes in Digital Trees.
Note: 25 min par contribution.
Jeudi 26 novembre 2015
09h30-09h45 Introduction
09h45-10h45 Exposé invité
Morgane Thomas-Chollier, École normale supérieure de Paris
Titre: Analyses of cis-regulatory elements from ChIP-seq and ChIP-exo experiments
10h45-11h05Pause café
11h05-12h20 3 exposés
Assemblability in RNA-seq data: Flagging complex regions in de Bruijn graphs [slides]
kissDE : a replicate-wise and annotation-free R package for testing the association between differential variants and experimental conditions in high throughput sequencing data [slides]
The Superstring Graph
12h20-12h40 Discussion
13h00-14h15Repas au CESFO
Lieu: Auditorium du LAL
14h30-16h10 4 exposés
Avoidability of long abelian-square
Fast Computation of Abelian Runs [slides]
MixTaR: de novo tandem repeat detection using short and long reads [slides]
Smiles2Monomers: a link between atomic and monomeric structures of polymers [slides]
16h10-16h40Pause café
16h40-17h55 3 exposés
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
Faster de Bruijn graph representation using minimal perfect hashing
Read Mapping on de Bruijn graph [slides]
Vendredi 27 novembre 2015
Lieu: Auditorium du LAL
09h00-10h00 Exposé invité
Can Alkan, Bilkent University, Turquie
Titre: Discovery of large genomic inversions using pooled clone sequencing [slides]
10h00-10h50 2 exposés
The pan-genome of the cultivated African rice Oryza glaberrima and its wild ancestor Oryza barthii [slides]
Ancestral reconstruction and investigations of genomic recombination on Campanulides chloroplasts [slides]
10h50-11h20Pause café
11h20-12h35 3 exposés
FM-index of an alignment: A compressed index for highly similar strings [slides]
Minimized Compact Automaton for Clumps over Degenerate Patterns [slides]
Complexité moyenne d’algorithmes de pattern matching et optimalité [slides]
12h35-13h00 Discussion
13h00-14h15Repas au CESFO
14h30-15h30 Exposé invité
Mark Daniel Ward, Purdue University, États-Unis
Titre: On the Variety of Uncorrelated Shapes in Digital Trees
15h30-15h50Pause café
15h50-16h40 2 exposés
Résultats algorithmiques pour le design d’ARN avec contraintes de séquence [slides]
Counting, generating and sampling tree alignments [slides]
16h40-16h50 Conclusion