Nous aurons le plaisir d’écouter des exposés invités de :
- Prof. Sven Rahmann, Faculty of Medicine, Duisburg-Essen University
- Dr. Laurent Bréhélin, LIRMM, Montpellier
Vous pouvez trouver les actes ici.
Tentative de Programme
| Mardi 4 novembre 2014 | Mercredi 5 novembre 2014 | 9h00-9h30 |
|---|---|---|
| 9h30-10h00 | Accueil café | |
| 10h00-10h30 | Ankit Dwivedi, Emmanuel Cornillot, Christelle Reynes, Nimol Khim, Didier Menard, Roger Frutos, Eric Rivals, Maxime Hebrard and Sylvain Milanesi: Functional annotation of polymorphisms identified by NGS approaches in P.falciparum | Sébastien Letort, Marie-Claude Babron and Emmanuelle Génin: MoBiDiCC, un nouvel outil pour rechercher des motifs HLA associés à une maladie dans des données cas-témoins |
| 10h30-11h00 | Leena Salmela and Eric Rivals: An efficient method for correcting long PacBio reads | Pause |
| 11h00-11h30 | Matthias Zytnicki: Tedna, a transposable element de novo assembler | Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot and Vincent Lacroix: Navigating in a Sea of Repeats in RNA-seq Without Drowning |
| 11h30-12h00 | Karel Brinda, Valentina Boeva and Gregory Kucherov: Dynamic mappers of NGS reads | Nadia Ben Nsira, Thierry Lecroq and Mourad Elloumi: Recherche de motifs dans des séquences similaires |
| 12h00-12h30 | Pause | Pause |
| 12h30-13h00 | ||
| 13h00-13h30 | ||
| 13h30-14h00 | ||
| 14h00-14h30 | Laurent Noe and Donald Martin: A coverage criterion for spaced seeds and its applications to SVM string-kernels and k-mer distances | |
| 14h30-15h00 | Christophe Vroland, Mikaël Salson and Hélène Touzet: A seeding framework for lossless filtering for the approximate pattern matching problem | |
| 15h00-15h30 | Yi Liu, Christine Keribin and Yves Rozenholc: Statistical estimation of genomic alterations of tumors | Pause |
| 15h30-16h00 | Pause | Bastien Cazaux, Thierry Lecroq and Eric Rivals: From Indexing Data Structures to de Bruijn Graphs |
| 16h00-16h30 | Bernd Jagla, Manuel Holtgrewe and Jean-Yves Coppée: Post-Alignment Visualization and Exploration of High-Throughput Sequencing Experiments | Gregory Kucherov, Kamil Salikhov and Dekel Tsur: Approximate String Matching using a Bidirectional Index |
| 16h30-17h00 | Huda Al-Nayyef, Christophe Guyeux and Jacques Bahi: Transposable Elements Investigation Tool applied to Pseudomonas aeruginosa | Discussion |
| 17h00-17h30 | Discussion |
